PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_107.25

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

HD-ZIP

Protein Properties

Length: 732aa MW: 80812.3 Da PI: 5.566

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_107.25	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.4e-21	54	109	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe +F+++++p++++r eL+k+lgL+ +q+k+WFqNrR+++k evm.model.supercontig_107.25 54 KKKYHRHTPHQIQELEFFFKECPHPDEKQRSELSKRLGLENKQIKFWFQNRRTQMK 109 79999************************************************999 PP
2	START	187.7	6.2e-59	255	478	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWd 73 la++a++el+k++ ++p+W ks + +n +e++++f++ + + +ea+r+sg+v+ ++ lve l+d + +W evm.model.supercontig_107.25 255 LALAAMDELIKMVHTDSPLWIKSLdgrrDLLNHEEYMRTFSPCIGmkpngFVSEASRESGLVIINSLALVEMLMDAN-RWM 334 6899*********************99********999899**************************.* PP TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSE CS START 74 etla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvv 143 e+++ +a t++vissg galq+m++e+q+lsplvp R + f+R+++q+ +g+w++vdvS+d +q+ p+ + + evm.model.supercontig_107.25 335 EMFPciivRAVTVDVISSGtggtrsGALQVMQSEFQVLSPLVPtRQVRFLRFCKQHAEGVWAVVDVSIDITQDGPNAQLHA 415 *************************************************************************988889 PP E-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 144 RaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++lpSg+++++++ng skvtwveh +++++ +h l+r lv+ g +ga +w atlqrqce+ evm.model.supercontig_107.25 416 SCRRLPSGCIVQDMANGCSKVTWVEHSEYDESAVHPLYRTLVSAGSGFGAHRWIATLQRQCEC 478 999********************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-21	38	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.27E-20	41	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.394	51	111	IPR001356	Homeobox domain
SMART	SM00389	2.3E-17	53	115	IPR001356	Homeobox domain
Pfam	PF00046	1.3E-18	54	109	IPR001356	Homeobox domain
CDD	cd00086	2.36E-19	54	111	No hit	No description
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
Gene3D	G3DSA:1.10.10.60	9.2E-4	94	138	IPR009057	Homeodomain-like
PROSITE profile	PS50848	43.471	245	481	IPR002913	START domain
SuperFamily	SSF55961	7.28E-32	248	478	No hit	No description
CDD	cd08875	1.96E-121	249	477	No hit	No description
SMART	SM00234	4.3E-45	254	478	IPR002913	START domain
Pfam	PF01852	5.7E-51	255	478	IPR002913	START domain
SuperFamily	SSF55961	1.51E-18	521	723	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MDDHDELGLL GENFDPGLIG RMREDGYESR SGSDNFEGAS GDDQDAGEDE PPRKKKYHRH 60 TPHQIQELEF FFKECPHPDE KQRSELSKRL GLENKQIKFW FQNRRTQMKT QLERHENVIL 120 RQENDKLRTE NELLKEAMRN PMCNNCGGPG MAGEISYEQH QLRIENARLK DELGRVCALA 180 NKFFGGPMSS LASPVPPSCL NSNLELAVGR NDFGGMSTTG TTLPMVLEFG DGALMPLMKP 240 MGNEMVYERS MFVDLALAAM DELIKMVHTD SPLWIKSLDG RRDLLNHEEY MRTFSPCIGM 300 KPNGFVSEAS RESGLVIINS LALVEMLMDA NRWMEMFPCI IVRAVTVDVI SSGTGGTRSG 360 ALQVMQSEFQ VLSPLVPTRQ VRFLRFCKQH AEGVWAVVDV SIDITQDGPN AQLHASCRRL 420 PSGCIVQDMA NGCSKVTWVE HSEYDESAVH PLYRTLVSAG SGFGAHRWIA TLQRQCECLA 480 ILMSSTLSTE DHSGFSAAGK KSMLKLAQRM TYNFCTGVCA SSVRKWDKLQ IGNVSEDVKV 540 MTRKNINEAG EPPGVVLSAA TSVWMPVTQE RLFNFLRDER LRSEWDILSN GGPMQEMLRI 600 AKGEERGNCV SLMRASANDG NENSMLILQE TWSDASGAVV VYAPVDISCI SVVMGGGDST 660 YVALLPSGFG IVPLPPNKCK GAEGCILTVG FQILVNSLPT AKLTVESVET VNNLISCTIQ 720 KIKASVSLTS P*

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MDDHDELGLL GENFDPGLIG RMREDGYESR SGSDNFEGAS GDDQDAGEDE PPRKKKYHRH  60
TPHQIQELEF FFKECPHPDE KQRSELSKRL GLENKQIKFW FQNRRTQMKT QLERHENVIL  120
RQENDKLRTE NELLKEAMRN PMCNNCGGPG MAGEISYEQH QLRIENARLK DELGRVCALA  180
NKFFGGPMSS LASPVPPSCL NSNLELAVGR NDFGGMSTTG TTLPMVLEFG DGALMPLMKP  240
MGNEMVYERS MFVDLALAAM DELIKMVHTD SPLWIKSLDG RRDLLNHEEY MRTFSPCIGM  300
KPNGFVSEAS RESGLVIINS LALVEMLMDA NRWMEMFPCI IVRAVTVDVI SSGTGGTRSG  360
ALQVMQSEFQ VLSPLVPTRQ VRFLRFCKQH AEGVWAVVDV SIDITQDGPN AQLHASCRRL  420
PSGCIVQDMA NGCSKVTWVE HSEYDESAVH PLYRTLVSAG SGFGAHRWIA TLQRQCECLA  480
ILMSSTLSTE DHSGFSAAGK KSMLKLAQRM TYNFCTGVCA SSVRKWDKLQ IGNVSEDVKV  540
MTRKNINEAG EPPGVVLSAA TSVWMPVTQE RLFNFLRDER LRSEWDILSN GGPMQEMLRI  600
AKGEERGNCV SLMRASANDG NENSMLILQE TWSDASGAVV VYAPVDISCI SVVMGGGDST  660
YVALLPSGFG IVPLPPNKCK GAEGCILTVG FQILVNSLPT AKLTVESVET VNNLISCTIQ  720
KIKASVSLTS P*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_107.25

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021892210.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A061G1P9	0.0	A0A061G1P9_THECC; Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein isoform 1
STRING	evm.model.supercontig_107.25	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105
Representative plant	OGRP145	15	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_107.25

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]