PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_107.128 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 392aa MW: 44113.7 Da PI: 7.341 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 210 | 269 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+g+H+h+k evm.model.supercontig_107.128 210 ADVWAWRKYGQKPIKGSPYPRNYYRCSSSkGCSARKQVERSNLDPNIFIVTYSGDHTHPK 269 69*************************998****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-30 | 195 | 270 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.787 | 204 | 270 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-26 | 204 | 270 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-37 | 209 | 269 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.1E-26 | 211 | 268 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MEDDWDLSAI VRSCRGKASV DKATESDDNS LACLASLTFE EEEDPFSFPS LVKYCFEKSE 60 FDSRSMSPCC ELQNSCRPFL QIPEFHPSAI DDPLVGSSAP AEFDSHRQQQ QHQFEPQDQQ 120 RRKRQVIHGK RSMFHTTPLS SVSTSCSPSR DRRQNAPLLS PSQLQQFQLH DPELPHQQQQ 180 QAHLHKPRCR KRKNQQKRTV CHVTAENLSA DVWAWRKYGQ KPIKGSPYPR NYYRCSSSKG 240 CSARKQVERS NLDPNIFIVT YSGDHTHPKP THRNSLAGST RNKPLSEALK SISSADPEQS 300 KPNPSCSSPL STNSFSPATM NGEEGNMERN PHEGLDSKEQ KEDDILIPNL RLNDHDNIFS 360 RLQTVRFDGS SGGSCDDGVG RSPVSDDNFK L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-18 | 210 | 271 | 17 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-18 | 210 | 271 | 17 | 80 | Disease resistance protein RRS1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_107.128 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892053.1 | 0.0 | probable WRKY transcription factor 27 | ||||
STRING | evm.model.supercontig_107.128 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9998 | 26 | 36 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52830.1 | 1e-62 | WRKY DNA-binding protein 27 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_107.128 |