PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_106.80
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 210aa    MW: 24207.7 Da    PI: 6.7753
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_106.80genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.34.4e-21381553127
                           NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                    G+rF P+deel+ + L+ k++g+  +   +++ke+d+y+ ePw      + ++++  f++k++++   ++r  r+ +sg+
  evm.model.supercontig_106.80  38 IGYRFTPSDEELL-QILAIKLRGEYeILGGHAVKEIDVYQKEPWLVF---D-KDESEPFYVKKNSS---KSRMDRKFASGT 110
                                   69***********.789999999984444466************985...3.34555677776654...5699**99**** PP

                           NAM  83 WkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyr 127
                                   W+   +  +v+++++++vg kk+L+f ++ +++++e+ +W+mhe++
  evm.model.supercontig_106.80 111 WRMERS-IDVVDQGDKVVGYKKMLTFEEKkKKKNSENGRWIMHEFS 155
                                   **8766.777777**************65377788999*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-2135161IPR003441NAC domain
PROSITE profilePS5100521.91936171IPR003441NAC domain
PfamPF023651.4E-1338155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MALIQSSGEN GLNCQLKSLV CSIIIKVHIK LLEGAWNIGY RFTPSDEELL QILAIKLRGE  60
YEILGGHAVK EIDVYQKEPW LVFDKDESEP FYVKKNSSKS RMDRKFASGT WRMERSIDVV  120
DQGDKVVGYK KMLTFEEKKK KKNSENGRWI MHEFSFFLSF LESCFFSVTG CWDLTWPQTI  180
GDYPSTQTPR SLPYRKEDYI DGTGELFNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_106.80
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892345.11e-111NAC domain-containing protein 41-like isoform X1
STRINGevm.model.supercontig_106.801e-155(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5881218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.22e-09NAC family protein