PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_106.63 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 210aa MW: 22614.8 Da PI: 7.9691 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 96 | 4e-30 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C++lr++C+++C+l++++ p++q++++ +v+k+FG++ ++++++a+p+++r+++++sl++eA ra +Pv Ga evm.model.supercontig_106.63 2 SCNGCRILRKGCSENCMLRQCLqwldsPQAQANATVFVAKFFGRAGLMSFISAVPQSQRPALFQSLLFEAVGRAVNPVGGA 82 6******************************************************************************** PP DUF260 77 vgvilklqqqleqlkaelall 97 vg++++++++++q+++e++l+ evm.model.supercontig_106.63 83 VGLLWTGNWHVCQSAVETVLR 103 ***************998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.466 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.3E-26 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MSCNGCRILR KGCSENCMLR QCLQWLDSPQ AQANATVFVA KFFGRAGLMS FISAVPQSQR 60 PALFQSLLFE AVGRAVNPVG GAVGLLWTGN WHVCQSAVET VLRGGVLQPL PEFYGAGPIP 120 DGDDCSESGI EVFRPVKADS RSVKRKRWDD DVAKFGSKDV LLSLGPESPE YRRAVSPSEE 180 SETTTLGSGS STNCSVVRGS ERPLLRLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_106.63 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892365.1 | 1e-152 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-68 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | B9SND0 | 3e-85 | B9SND0_RICCO; LOB domain-containing protein, putative | ||||
STRING | evm.model.supercontig_106.63 | 1e-151 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM23107 | 4 | 4 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-70 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_106.63 |