PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_104.9
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YA
Protein Properties Length: 492aa    MW: 54775.9 Da    PI: 9.1672
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_104.9genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.11.7e-29189245158
                    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                  d p+YVNaKQy++I++RRq+Rak+  e+k  ++srkpy+h SRh hA+rRpRg+gGrF
  evm.model.supercontig_104.9 189 DGPIYVNAKQYHGIIRRRQSRAKAVLENKA-TRSRKPYMHYSRHLHAMRRPRGCGGRF 245
                                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-33187248IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.631188248IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-21191213IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.0E-26191245IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.0E-21222245IPR001289Nuclear transcription factor Y subunit A
PfamPF059381.2E-25384482IPR010264Plant self-incompatibility S1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAMQTVYFKE HEGVVHNPTG QFSSVPQASR WGAFGSQSVY VEACGQFKSL SMENTAGGFQ  60
LAAAKQRGTC TDQGPDKGTV TPFTIFPVDK SVIYTIGREL GGARVYGPRM SDPVLIGDRK  120
NSAHGHKPQG TTAVQSALSD YHAGFELGFG QPMICAKYAY MDQCYGLFSA YAPQISGRIM  180
LPLNLTTDDG PIYVNAKQYH GIIRRRQSRA KAVLENKATR SRKPYMHYSR HLHAMRRPRG  240
CGGRFLNTKN LDSIKGATEV KNASEGKLYL LTGSQNSDSE VLQSDSGTLN SSKETNGIGS  300
NLSGSEVTSL YSRRDIGHFS INHLGSSVRS FSSILDSGHS IVMPTKWEED KSITGMKSIR  360
HRTLAILFML LFGLSKSTAK GKTRVRVVNK LGTNRIMNIH CQSRDDDLGY HAILDGSEIE  420
WKFAVNFWGT TLYYCDVQWD YSKWHHFDAY SSELHYDRCK TECIWMVTKD GLFNFNEEFG  480
NWVLVPFQDS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-18191253466NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_104.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892429.10.0nuclear transcription factor Y subunit A-10-like, partial
TrEMBLA0A061EVQ61e-145A0A061EVQ6_THECC; Nuclear transcription factor Y subunit A-10, putative
STRINGevm.model.supercontig_104.90.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-53nuclear factor Y, subunit A10