PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_104.84 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | TCP | ||||||||
Protein Properties | Length: 422aa MW: 45843.5 Da PI: 8.0832 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 22.1 | 4.9e-07 | 73 | 102 | 35 | 64 |
TCP 35 LqdeLGfdkdsktieWLlqqakpaikeltg 64 L++eLG+ ++++t+eWLl q p + + evm.model.supercontig_104.84 73 LTRELGYRSNGQTVEWLLSQVRPDLILPNP 102 9*******************9998776555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.6E-4 | 59 | 96 | IPR005333 | Transcription factor, TCP |
Gene3D | G3DSA:3.60.110.10 | 1.6E-57 | 134 | 414 | IPR003010 | Carbon-nitrogen hydrolase |
SuperFamily | SSF56317 | 3.27E-57 | 135 | 415 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE profile | PS50263 | 36.456 | 136 | 421 | IPR003010 | Carbon-nitrogen hydrolase |
Pfam | PF00795 | 1.5E-49 | 137 | 411 | IPR003010 | Carbon-nitrogen hydrolase |
PROSITE pattern | PS00920 | 0 | 168 | 183 | IPR000132 | Nitrilase/cyanide hydratase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MARVKKSNHQ MEALQQRASK AENADASGSI VNAEEMKNSR KRRRIGGTKA KPETGIRMRV 60 QITPNCCPGI SLLTRELGYR SNGQTVEWLL SQVRPDLILP NPNSLPTHRK QKPVCMAYPE 120 DEKIVDLISG GPRQPVRVTV VQASTVFLDT PATLDKAERL VASAAAYGSQ LVVFPEAFVG 180 GYPYCVMLEA ALVTHSTNEN EEFLNYHASA IDVPGPEVDR LAKIAGRNKV QLVMGVVERV 240 GSYLFSTILF FDSLGQFIGK NQKVRLLASE CAVWWSGGTS SVLVYEGPAG KIGGLVGWDN 300 RIPRLRTELY ARGIEIYCAP AVEARDKWQA SVTHIALEGG CFVLSANQFC RKKDYRLPEY 360 FCGENASQDA IICSGGSVII SPSGTILAGP NFLGESLISA DLDLEEIARA KLEAGIGHNF 420 G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3wuy_A | 9e-31 | 136 | 418 | 16 | 297 | Nitrilase |
3wuy_B | 9e-31 | 136 | 418 | 16 | 297 | Nitrilase |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 39 | 43 | RKRRR |
2 | 40 | 44 | KRRRI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Highly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_104.84 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892521.1 | 0.0 | bifunctional nitrilase/nitrile hydratase NIT4B-like | ||||
Swissprot | Q42966 | 1e-125 | NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B | ||||
TrEMBL | A0A2N9ICC7 | 1e-164 | A0A2N9ICC7_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_104.84 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20587 | 5 | 6 | Representative plant | OGRP1835 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G45150.1 | 1e-07 | TCP domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_104.84 |
Publications ? help Back to Top | |||
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