PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_102.29
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 291aa    MW: 32167.7 Da    PI: 5.8225
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_102.29genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-161462148
                                  TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+W++eEd +l++++++ G+g +W + +++ g++R++k+c++rw++yl
  evm.model.supercontig_102.29 14 KGPWSPEEDAKLKEYIEKNGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                                  79*********************************************97 PP
2Myb_DNA-binding39.81.1e-1269111246
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   g +T +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  evm.model.supercontig_102.29  69 GEFTDDEDRIICSLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                   78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.172962IPR017930Myb domain
SuperFamilySSF466895.86E-2711109IPR009057Homeodomain-like
SMARTSM007175.2E-121364IPR001005SANT/Myb domain
PfamPF002492.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-241569IPR009057Homeodomain-like
CDDcd001672.57E-81662No hitNo description
PROSITE profilePS5129422.07663117IPR017930Myb domain
SMARTSM007171.7E-1167115IPR001005SANT/Myb domain
PfamPF002492.4E-1169111IPR001005SANT/Myb domain
CDDcd001671.58E-770113No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KNGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDDEDRIIC SLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM  120
VAANPLSYPQ PDSTFSSPSS SSSSLSYNPS NSNPTYYIPA PPATSLTTGL EPISYSSSTL  180
LNSLHPVQET ISFNYQVNES VVMVGRDQAS ACSSSDGSSS NKMISHGVEQ QNISWYSNGV  240
EDEEQRNGLW SSSEAALDYG LEEIKGLTSS NNNNRESCNS FLFEESKTEE K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_102.29
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892712.10.0transcription factor RAX2
SwissprotQ9SJL73e-75RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A1Q3ARD71e-102A0A1Q3ARD7_CEPFO; Myb_DNA-binding domain-containing protein
STRINGevm.model.supercontig_102.290.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.16e-72MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]