PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_101.39
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 169aa    MW: 18929.1 Da    PI: 7.2149
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_101.39genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-193079255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a+++++g
  evm.model.supercontig_101.39 30 KYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTPEMAARAHDVAALAIKG 79
                                  8*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-223087IPR016177DNA-binding domain
PfamPF008471.5E-133079IPR001471AP2/ERF domain
PROSITE profilePS5103223.3013087IPR001471AP2/ERF domain
SMARTSM003806.4E-383093IPR001471AP2/ERF domain
CDDcd000181.21E-343087No hitNo description
Gene3DG3DSA:3.30.730.102.7E-323088IPR001471AP2/ERF domain
PRINTSPR003673.1E-103142IPR001471AP2/ERF domain
PRINTSPR003673.1E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
METHHLNLLP STTNPNPNPK KRQRRSDEEK YRGVRMRSWG KWVSEIREPR KKSRIWLGTY  60
PTPEMAARAH DVAALAIKGS SAHLNFPQFA HQLPRPLTTS PKDIQAAAAK AAASTSFQAK  120
HSSTGDDDAH DEDTLFDLPD LVDSNAAFCY CSSSWPPDEL PEFVWDNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1630871472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824PKKRQRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_101.39
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892753.11e-123ethylene-responsive transcription factor ERF035-like
SwissprotQ8LBQ79e-48ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A1S2YUE11e-55A0A1S2YUE1_CICAR; ethylene-responsive transcription factor ERF034
STRINGevm.model.supercontig_101.391e-123(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-46ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]