PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_101.29 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 276aa MW: 30501 Da PI: 7.0118 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.7e-18 | 124 | 178 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k evm.model.supercontig_101.29 124 RKKLRLSKEQSMVLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 178 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.1 | 7.3e-41 | 124 | 213 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ evm.model.supercontig_101.29 124 RKKLRLSKEQSMVLEETFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQ 204 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreel 91 kev+eLr +l evm.model.supercontig_101.29 205 KEVQELR-AL 213 ******9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 2.5E-29 | 1 | 95 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 6.0E-19 | 102 | 178 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-19 | 111 | 181 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 120 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-15 | 122 | 184 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.60E-16 | 124 | 181 | No hit | No description |
Pfam | PF00046 | 5.7E-16 | 124 | 178 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 155 | 178 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 5.9E-27 | 180 | 223 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.2E-11 | 180 | 214 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MGERDDDLGL SLSLGGALNE SSLKLNLMTP LASNQQKTIW NELFHSSEGN ADGRPSFRGI 60 DVNRVPSAVE YEEETGVSSP NSTVSSISGK RSEREVIGEE NEAERTSCSR GSDDEDGGNG 120 DASRKKLRLS KEQSMVLEET FKEHSTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK 180 QTEVDCEYLK RCCENLTEEN RRLQKEVQEL RALKLSPHLY MHMTPPTTLT MCPSCERVAV 240 SSSSSSASSA AATTGPSSQR SVPISPWPAI PNHRP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 122 | 128 | SRKKLRL |
2 | 172 | 180 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_101.29 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021892744.1 | 0.0 | homeobox-leucine zipper protein HAT3 | ||||
Swissprot | P46602 | 1e-109 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A067HCG8 | 1e-139 | A0A067HCG8_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NNU8 | 1e-139 | A0A2H5NNU8_CITUN; Uncharacterized protein | ||||
TrEMBL | V4U8Y0 | 1e-139 | V4U8Y0_9ROSI; Uncharacterized protein | ||||
STRING | evm.model.supercontig_101.29 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 1e-87 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_101.29 |
Publications ? help Back to Top | |||
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