PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_101.16
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 168aa    MW: 18998.2 Da    PI: 9.6706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_101.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.75.7e-1864115256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                                   +ykGVr+++ +g+++AeIrdp     k +r +lg++  +eeAa a+++a  k++g+
  evm.model.supercontig_101.16  64 KYKGVRRRP-WGKYAAEIRDP---ErKGARKWLGTYEKPEEAALAYDQATFKMRGA 115
                                   7********.**********7...3235*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-3064123IPR001471AP2/ERF domain
CDDcd000184.40E-2864124No hitNo description
PfamPF008474.6E-1364114IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2264123IPR016177DNA-binding domain
SMARTSM003801.0E-3364128IPR001471AP2/ERF domain
PROSITE profilePS5103222.93264122IPR001471AP2/ERF domain
PRINTSPR003672.9E-126576IPR001471AP2/ERF domain
PRINTSPR003672.9E-12104124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MNPPYNSELA ILEEIRHHLL DDDHETIQSN NNSTMVFSGR TGSNSRDETT SNLKESDMRR  60
SIMKYKGVRR RPWGKYAAEI RDPERKGARK WLGTYEKPEE AALAYDQATF KMRGAKAKLN  120
FPHLIGSDAF NFEPVRVTNK RRSPESSSSC SFSWSCSLSE GGSLMSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2565127668ATERF1
3gcc_A1e-2565127668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_101.16
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892757.11e-123ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-39ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A061DWK43e-41A0A061DWK4_THECC; Ethylene-responsive element binding factor 13, putative
TrEMBLA0A067KAL32e-41A0A067KAL3_JATCU; Uncharacterized protein
TrEMBLB9RD033e-41B9RD03_RICCO; Ethylene-responsive transcription factor, putative
TrEMBLW9QSR52e-41W9QSR5_9ROSA; Ethylene-responsive transcription factor 13
STRINGevm.model.supercontig_101.161e-122(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-39ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]