PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_101.15
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 164aa    MW: 18279.4 Da    PI: 9.0579
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_101.15genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.97.7e-2169120155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GVr+++ +g+++AeIrdp++ng  +r++lg++ tae+Aa a+++a+ k++g
  evm.model.supercontig_101.15  69 SNYRGVRRRP-WGKYAAEIRDPKKNG--ARVWLGTYETAEDAAVAYDQAAYKMRG 120
                                   57********.***********9998..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-3069130No hitNo description
SuperFamilySSF541716.54E-2469129IPR016177DNA-binding domain
PfamPF008475.7E-1469120IPR001471AP2/ERF domain
PROSITE profilePS5103224.11870128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3370129IPR001471AP2/ERF domain
SMARTSM003801.0E-3770134IPR001471AP2/ERF domain
PRINTSPR003678.5E-117182IPR001471AP2/ERF domain
PRINTSPR003678.5E-1194110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MGSDTWQSSD SALLESIRHH LLADDFEASV AAMLTNRTET INTGEIIKAE TSEDTGEMRD  60
IQGTLSKGSN YRGVRRRPWG KYAAEIRDPK KNGARVWLGT YETAEDAAVA YDQAAYKMRG  120
SKAKLNFPHL IGSCDYQPLR VSPKRRPTEP SSCLNDQDVK RRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3366135170ATERF1
3gcc_A4e-3366135170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143162KRRPTEPSSCLNDQDVKRRK
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_101.15
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892754.11e-120ethylene-responsive transcription factor 13-like
SwissprotQ8L9K19e-48ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A061DWK43e-52A0A061DWK4_THECC; Ethylene-responsive element binding factor 13, putative
STRINGevm.model.supercontig_101.151e-119(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-40ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]