PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1007.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | Whirly | ||||||||
Protein Properties | Length: 290aa MW: 32309.9 Da PI: 10.0483 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 219 | 4.2e-68 | 104 | 242 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpa 81 s+yk+kaal+v++++p+f+aldsg++kl+++G++ll++a+a+++r+ydW++kq+f+ls+te+++lv+l+++esceffhdp+ evm.model.supercontig_1007.4 104 SIYKGKAALTVEPRAPEFVALDSGAFKLSKEGFVLLQFAPAAGVRQYDWSRKQVFSLSVTEIGTLVSLGTRESCEFFHDPF 184 7******************************************************************************** PP Whirly 82 akgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 +++s+eGkvrk+lkvePlpdGsG+f+nlsv+n+l++ +e++++P+++ae++vl s+++ evm.model.supercontig_1007.4 185 KGKSEEGKVRKVLKVEPLPDGSGHFFNLSVQNKLLNMDENIYIPITRAEYTVLVSAFN 242 *****************************************************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 5.2E-69 | 93 | 245 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 1.65E-64 | 97 | 255 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 9.1E-61 | 105 | 239 | IPR013742 | Plant transcription factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045910 | Biological Process | negative regulation of DNA recombination | ||||
GO:0009508 | Cellular Component | plastid chromosome | ||||
GO:0009570 | Cellular Component | chloroplast stroma | ||||
GO:0003697 | Molecular Function | single-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0042162 | Molecular Function | telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MLQQQLQFLS SPPVAVKFKA LNPKFCHTSS FSYTNSIDTS HGFSSNISTI SFKENVTKKL 60 LVKCRHSDYF EQKKFSDSSS FSSQSPAGAT TAGGLPPRFF VGHSIYKGKA ALTVEPRAPE 120 FVALDSGAFK LSKEGFVLLQ FAPAAGVRQY DWSRKQVFSL SVTEIGTLVS LGTRESCEFF 180 HDPFKGKSEE GKVRKVLKVE PLPDGSGHFF NLSVQNKLLN MDENIYIPIT RAEYTVLVSA 240 FNYAIFIFML VWRLLVSQSH VRERVKGPSS VIPKQARSIA YNENHLRES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4koo_A | 2e-98 | 92 | 252 | 2 | 161 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_B | 2e-98 | 92 | 252 | 2 | 161 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_C | 2e-98 | 92 | 252 | 2 | 161 | Single-stranded DNA-binding protein WHY1, chloroplastic |
4koo_D | 2e-98 | 92 | 252 | 2 | 161 | Single-stranded DNA-binding protein WHY1, chloroplastic |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that functions in both chloroplasts and nucleus. In chloroplasts, maintains plastid genome stability by preventing break-induced and short homology-dependent illegitimate recombinations. In nucleus, modulates telomere length homeostasis by inhibiting the action of the telomerase at the extreme termini of chromosomes. Is recruited to a distal element upstream of the kinesin KP1 to mediate the transcriptional repression of KP1. Is required for full salicylic acid-dependent plant disease resistance responses. Can bind double-stranded DNA in vivo. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:17217467, ECO:0000269|PubMed:19666500, ECO:0000269|PubMed:19669906, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1007.4 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA) and infection by H.parasitica. {ECO:0000269|PubMed:14960277, ECO:0000269|PubMed:19669906}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021897420.1 | 1e-169 | single-stranded DNA-binding protein WHY1, chloroplastic-like | ||||
Swissprot | Q9M9S3 | 1e-110 | WHY1_ARATH; Single-stranded DNA-binding protein WHY1, chloroplastic | ||||
TrEMBL | A0A2C9WM72 | 1e-113 | A0A2C9WM72_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_1007.4 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5023 | 27 | 52 | Representative plant | OGRP2316 | 16 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02740.2 | 1e-104 | ssDNA-binding transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1007.4 |