PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_10.75 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | WRKY | ||||||||
Protein Properties | Length: 307aa MW: 34479.8 Da PI: 6.521 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.2 | 8e-29 | 154 | 213 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy WrKYGqK+ ++++ pr+YY+C+ a +Cpvkkkv+rs ed++v++ tYegeH+h+ evm.model.supercontig_10.75 154 VKDGYLWRKYGQKVTRDNPSPRAYYKCALApSCPVKKKVQRSIEDQSVIVATYEGEHTHP 213 58**************************999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-27 | 149 | 214 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.775 | 149 | 215 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-24 | 150 | 214 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-32 | 154 | 214 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.5E-23 | 155 | 213 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVMDLSFSPL RSTASLDLNV NPDLREDELV VPPKEYLESA EFMELQRKLS EKPNHHDERG 60 ELMEEMDRLS TENKELSQMI TVMCENYNSL RKQMVDFVNE KKRKSDQSST QSSSTDDNGS 120 WNKRLKEDDP GAIKEPKIST VYVKTHPFDT SLIVKDGYLW RKYGQKVTRD NPSPRAYYKC 180 ALAPSCPVKK KVQRSIEDQS VIVATYEGEH THPMEATPSS NVRSGSAGSA GKQGGRTMTM 240 DLTRSTTSRL NKGMLGRTMD ETPQQLQQML VDHMASSLTN DPKFTAAIAA AFSENMHEGI 300 NINPPH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-19 | 153 | 214 | 13 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_10.75 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906344.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-72 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A140H8T3 | 4e-86 | A0A140H8T3_MANES; WRKY transcription factor 79 | ||||
STRING | evm.model.supercontig_10.75 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2477 | 28 | 72 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-68 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_10.75 |