PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_10.25
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 294aa    MW: 33859.9 Da    PI: 7.3097
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_10.25genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.71.6e-51121361128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  lp+GfrFhP+deelv++yL kkv++++ ++ +++ +vd++++ePwd+p++   + kewyf+s+rd+kyatg r+nrat+sgy
  evm.model.supercontig_10.25  12 LPAGFRFHPKDEELVCDYLMKKVTRRT-SF-DFFIDVDLNSCEPWDIPETGCVGGKEWYFYSQRDRKYATGARTNRATASGY 91 
                                  799********************9998.33.6789*************75556899************************** PP

                          NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  Wkatgkd++vl+ k +lvg++ktLvfy+grapkg+ktdWvmhe+r+
  evm.model.supercontig_10.25  92 WKATGKDRAVLR-KATLVGMRKTLVFYQGRAPKGTKTDWVMHEFRI 136
                                  ***********9.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-592156IPR003441NAC domain
PROSITE profilePS5100555.82212156IPR003441NAC domain
PfamPF023653.2E-2713136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMSKISMVES KLPAGFRFHP KDEELVCDYL MKKVTRRTSF DFFIDVDLNS CEPWDIPETG  60
CVGGKEWYFY SQRDRKYATG ARTNRATASG YWKATGKDRA VLRKATLVGM RKTLVFYQGR  120
APKGTKTDWV MHEFRIEGPH TPKNEEDWVL CRVFYKKREN VGNMKSNWFD DTGCSSSLPP  180
LMDSYITFDQ TQPNLHHDHH HQHHDHEQVP CFSIFSQNPN FTNQLLPVTA DHHHHEDRHD  240
HHLSSSDNNF IKAVLNQLTN NIKTSPSMAE AASSDSFLSE VAMPTTALWN QYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-48815911171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_10.25
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906513.10.0NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-104NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A151SW561e-121A0A151SW56_CAJCA; NAC domain-containing protein 21/22
STRINGevm.model.supercontig_10.250.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36192859
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-104NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]