PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_10.14

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 491aa MW: 53852.9 Da PI: 6.7018

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_10.14	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.7	1.3e-33	257	311	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFveav++L G+ekAtPk +l+lm+v+gLt++hvkSHLQkYRl evm.model.supercontig_10.14 257 KPRMRWTPELHERFVEAVNKLDGPEKATPKGVLKLMNVEGLTIYHVKSHLQKYRL 311 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.695	254	314	IPR017930	Myb domain
SuperFamily	SSF46689	1.52E-18	254	311	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-31	256	312	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	257	312	IPR006447	Myb domain, plants
Pfam	PF00249	8.3E-10	259	310	IPR001005	SANT/Myb domain
Pfam	PF14379	8.8E-22	347	394	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MKHRSIMSVA PSESRNGVRH SFCTTTSPIH NFLGVETERE TSPFIQSESL GSPNQVRGYM 60 IQPQKHFLKS GPSSPVSPSP NGQHPRSTFS RSSLFCTSLY LSSSSKSETQ RQLGNLPFLP 120 NPPTYNHSTS AVESAKSPAI FSEDLGNPYD DDQSEALMRD FLNIPGDTSD GSFHGMNCGN 180 DSLALTEQME LQFLSEELDI AITDHGETPR IDEIYEIPQA SPKSALGFTC SQSFASVVPA 240 ADAVSTQPSS GSATVHKPRM RWTPELHERF VEAVNKLDGP EKATPKGVLK LMNVEGLTIY 300 HVKSHLQKYR LAKYMPEKKE EKKPSSSEEK KAASSSTESD GRKKGGIQIT EALRMQVEVQ 360 KQLHEQLEIQ RALQLRIEEH ARYLQKILEE QQKAGGTLIP SQGFSFMSNS HQNSELQSST 420 SAAAALPSQP SGSSSPSPSI SNHKDDPDKN DSKAEKSPKR PRLEHETKKA SDEAEVGRQE 480 ASPLHVVSTL *

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MKHRSIMSVA PSESRNGVRH SFCTTTSPIH NFLGVETERE TSPFIQSESL GSPNQVRGYM  60
IQPQKHFLKS GPSSPVSPSP NGQHPRSTFS RSSLFCTSLY LSSSSKSETQ RQLGNLPFLP  120
NPPTYNHSTS AVESAKSPAI FSEDLGNPYD DDQSEALMRD FLNIPGDTSD GSFHGMNCGN  180
DSLALTEQME LQFLSEELDI AITDHGETPR IDEIYEIPQA SPKSALGFTC SQSFASVVPA  240
ADAVSTQPSS GSATVHKPRM RWTPELHERF VEAVNKLDGP EKATPKGVLK LMNVEGLTIY  300
HVKSHLQKYR LAKYMPEKKE EKKPSSSEEK KAASSSTESD GRKKGGIQIT EALRMQVEVQ  360
KQLHEQLEIQ RALQLRIEEH ARYLQKILEE QQKAGGTLIP SQGFSFMSNS HQNSELQSST  420
SAAAALPSQP SGSSSPSPSI SNHKDDPDKN DSKAEKSPKR PRLEHETKKA SDEAEVGRQE  480
ASPLHVVSTL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	257	314	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_10.14

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021906503.1	0.0	myb family transcription factor PHL6
Swissprot	Q949U2	1e-152	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A1R3IL11	0.0	A0A1R3IL11_COCAP; Uncharacterized protein
STRING	evm.model.supercontig_10.14	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6786	27	44
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	1e-129	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_10.14

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]