PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.supercontig_10.125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 312aa MW: 33827.6 Da PI: 8.69 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 158 | 207 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +grW AeIrd r r++lg+f+taeeAa+a++aa+++l+g evm.model.supercontig_10.125 158 SYRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 207 69*******.**********32....25*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.72E-15 | 157 | 216 | No hit | No description |
Pfam | PF00847 | 3.1E-14 | 158 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-21 | 158 | 215 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.5E-33 | 158 | 221 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.893 | 158 | 215 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 158 | 215 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 159 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 181 | 197 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
MENASQQRIP QSVPFFFRPE THQNPETFHL LTEIPGFYKP PFNPHFPFCS LPSPAPFCRP 60 QSVDISSLFF KDEPANTSPE SETRSHPKLE TRSDSPVLDG IAAVVGQHVL FGSKPAENTA 120 AEESNKAETS AFISGFQRLG SKHEDDKRND VGDSVQKSYR GVRKRPWGRW SAEIRDRIGR 180 CRHWLGTFDT AEEAARAYDA AARRLRGSKA KTNFEIPSVL PLSPSSSSSA CSSISTCSAF 240 DVKRRGKGVN KSLNNSCRRK CAVVTSVAHL FSSSSIVNGG NGSVVELDLK LGVGFDGGSD 300 GDKNDGSSMA G* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-17 | 157 | 216 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.model.supercontig_10.125 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021906563.1 | 0.0 | ethylene-responsive transcription factor ERF084 | ||||
TrEMBL | A0A1Q3BSP5 | 2e-74 | A0A1Q3BSP5_CEPFO; AP2 domain-containing protein | ||||
STRING | evm.model.supercontig_10.125 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80580.1 | 5e-29 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.model.supercontig_10.125 |