PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1.55 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 23887.7 Da PI: 10.3916 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.4e-09 | 2 | 26 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 + W+ Ia +++ +Rt++++k++w+++l evm.model.supercontig_1.55 2 R-WSVIATHLP-KRTDNEIKHYWNTHL 26 4.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.33 | 1 | 30 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-7 | 2 | 35 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.39E-7 | 2 | 26 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-12 | 2 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-7 | 2 | 26 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MRWSVIATHL PKRTDNEIKH YWNTHLKKRL NKMGIDPVTH KPKITAIGCS DGNSTKDVAT 60 LNHMAQLEAK ARLVREAKLL AASSNPPLQF HQPARQNLTT NKAAIVPRVG RTQCLDMLKV 120 GQGKVSNMFS AVTSAINDVN LIEGLKLPTS TLSFLENTIP ITLTVGFSEN QFVSDSHMCG 180 GMDFKDVGKK LQWLGMQACK NIKPSSDGIL EIQTRQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1.55 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910170.1 | 1e-114 | transcription factor MYB106-like | ||||
Swissprot | Q9LE63 | 1e-30 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A061EHS7 | 5e-48 | A0A061EHS7_THECC; Myb domain protein 106, putative | ||||
STRING | evm.model.supercontig_1.55 | 1e-161 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20597 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 1e-32 | myb domain protein 106 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1.55 |