PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.48
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 182aa    MW: 21262.4 Da    PI: 10.1429
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.48genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.61.2e-5391341128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 lppGfrFhPtdeel+++yL++++ ++++++ ++i+e++iyk++Pw+Lp k++ +e+ewyfFs+r++ky++g r+nrat sgyW
  evm.model.supercontig_1.48   9 LPPGFRFHPTDEELIMYYLRNQLFSRPCPA-SIIPELNIYKFDPWQLPDKAEFGENEWYFFSPRERKYPNGVRPNRATVSGYW 90 
                                 79****************************.89***************99999****************************** PP

                         NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg+dk+++s +++ vg+kk Lvfykg+ pkg kt+W+mheyrl
  evm.model.supercontig_1.48  91 KATGTDKAIYS-SSTYVGVKKALVFYKGKPPKGIKTNWIMHEYRL 134
                                 ***********.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-665158IPR003441NAC domain
PROSITE profilePS5100560.7739158IPR003441NAC domain
PfamPF023651.7E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEGKSNSNLP PGFRFHPTDE ELIMYYLRNQ LFSRPCPASI IPELNIYKFD PWQLPDKAEF  60
GENEWYFFSP RERKYPNGVR PNRATVSGYW KATGTDKAIY SSSTYVGVKK ALVFYKGKPP  120
KGIKTNWIMH EYRLNQSRKQ SKGSMRLDDW VLCRIYKRKL SKVLESHKLV EEMPQPHSMS  180
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-69816116168NO APICAL MERISTEM PROTEIN
1ut4_B7e-69816116168NO APICAL MERISTEM PROTEIN
1ut7_A7e-69816116168NO APICAL MERISTEM PROTEIN
1ut7_B7e-69816116168NO APICAL MERISTEM PROTEIN
3swm_A7e-69816119171NAC domain-containing protein 19
3swm_B7e-69816119171NAC domain-containing protein 19
3swm_C7e-69816119171NAC domain-containing protein 19
3swm_D7e-69816119171NAC domain-containing protein 19
3swp_A7e-69816119171NAC domain-containing protein 19
3swp_B7e-69816119171NAC domain-containing protein 19
3swp_C7e-69816119171NAC domain-containing protein 19
3swp_D7e-69816119171NAC domain-containing protein 19
4dul_A7e-69816116168NAC domain-containing protein 19
4dul_B7e-69816116168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.48
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910534.11e-131LOW QUALITY PROTEIN: NAC transcription factor 29-like
SwissprotK4BNG71e-100NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A1D6YZE61e-127A0A1D6YZE6_CARPA; NAC1
STRINGevm.model.supercontig_1.481e-133(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77072641
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-100NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]