PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.43
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 407aa    MW: 45549.3 Da    PI: 6.5607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.43genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-16136181147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  evm.model.supercontig_1.43 136 RGHWRPTEDAKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 181
                                 899*****************************.***********996 PP
2Myb_DNA-binding57.43.3e-18188231146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  evm.model.supercontig_1.43 188 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 231
                                 678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.722131182IPR017930Myb domain
SMARTSM007174.0E-14135184IPR001005SANT/Myb domain
PfamPF002497.0E-16136181IPR001005SANT/Myb domain
SuperFamilySSF466893.74E-28136229IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-26137189IPR009057Homeodomain-like
CDDcd001674.85E-13139180No hitNo description
PROSITE profilePS5129427.592183237IPR017930Myb domain
SMARTSM007178.2E-15187235IPR001005SANT/Myb domain
PfamPF002495.3E-15188230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-21190236IPR009057Homeodomain-like
CDDcd001674.24E-12190230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDNKCVLYAT DSTNGLTCYS STTSSSSSSS PLALVYADMG SLSLSPKYGV VPTLSSSHQN  60
YGSLDIENGN SSWVFPFNAS CSTRNFEEHH NSNVVDFSDG YGENNERINL NEDHPNDQNM  120
ENGKETDSGQ SKLCARGHWR PTEDAKLKEL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN  180
QLDPRINRRA FTEEEEERLM QAHRLYGNKW AMIARLFPGR TDNAVKNHWH VIMARKYREQ  240
SSAYRRRKMN QSVYRGMDEI PSTITDQPQD CSLSIPRRRF SNISPFPFGS FNGGGGEALP  300
GSGFPPQQTP FHFFSGCNSD EVMGIFRQSR VWDRPVDEPH NIYTQHNPPY MMAIQQSDLQ  360
VLHSFSDCPA HQISASEAST SVAPASGHNH DTVSPPFIDF LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-341362367107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.43
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346331e-67KM034633.1 Jatropha curcas clone JcMYB012 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910385.10.0transcription factor MYB105
SwissprotQ9SEZ47e-75MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2P5XVG31e-160A0A2P5XVG3_GOSBA; Uncharacterized protein
TrEMBLA0A438G4R31e-160A0A438G4R3_VITVI; Transcription factor MYB105
STRINGevm.model.supercontig_1.430.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.17e-77myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]