PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.42
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family LBD
Protein Properties Length: 208aa    MW: 22655.2 Da    PI: 9.4139
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.42genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260963.9e-304104196
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a p++ r+++++sl++eA+ r+ +PvyG++g
  evm.model.supercontig_1.42   4 SCNGCRVLRKGCTHNCIIRPCLhwiksPDSQANATLFLAKFYGRAGLLNLLQAGPHHLRPAIFRSLLFEACGRVVNPVYGSLG 86 
                                 6********************************************************************************** PP

                      DUF260  79 vilklqqqleqlkaelal 96 
                                 ++++++++ +q++++ +l
  evm.model.supercontig_1.42  87 LMWSGNWKQCQAAVDSVL 104
                                 ***********9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7273109IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-244101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCTHNCI IRPCLHWIKS PDSQANATLF LAKFYGRAGL LNLLQAGPHH  60
LRPAIFRSLL FEACGRVVNP VYGSLGLMWS GNWKQCQAAV DSVLNGIPIT QHSSSAPHMI  120
TPPLNSYDMR HLPKNLNRVP TRTRFNRPTS VDPDKVGEPV NGTKTQPVVN EDGEVGLELS  180
LGPVPQLVPP GEANKCSISD LRVYSGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.42
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910386.11e-153LOB domain-containing protein 42-like
SwissprotQ9CA303e-74LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A061ED632e-79A0A061ED63_THECC; LOB domain-containing protein 42
STRINGevm.model.supercontig_1.421e-152(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-76LOB domain-containing protein 42