PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1.339 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | LBD | ||||||||
Protein Properties | Length: 162aa MW: 18112.4 Da PI: 8.7839 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.5 | 3.5e-41 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vhk++Gasnv k+l++lp + r +a++sl++eA++r++dPvyG+vg+i+ evm.model.supercontig_1.339 5 RCAACKYLRRRCPQDCIFSPYFPSNNPQRFAFVHKIYGASNVAKMLQQLPSHLRGQAADSLYFEAQCRIEDPVYGCVGIISV 86 6********************************************************************************* PP DUF260 83 lqqqleqlkaelallkee 100 l++q+++++++la++++e evm.model.supercontig_1.339 87 LHNQIQKAENQLARTQAE 104 *************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.708 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-41 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MASGRCAACK YLRRRCPQDC IFSPYFPSNN PQRFAFVHKI YGASNVAKML QQLPSHLRGQ 60 AADSLYFEAQ CRIEDPVYGC VGIISVLHNQ IQKAENQLAR TQAEIAVYSS RANPLQLPQQ 120 QQFEANPIFI NSSWTKLEQY GTGTSSFAAA NFNYQSPYGF N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-38 | 2 | 109 | 8 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-38 | 2 | 109 | 8 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1.339 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910100.1 | 1e-117 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 8e-56 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A061FP58 | 1e-63 | A0A061FP58_THECC; LOB domain-containing protein 23 | ||||
STRING | evm.model.supercontig_1.339 | 1e-117 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-58 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1.339 |