PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.3
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 293aa    MW: 32004.5 Da    PI: 8.1962
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.3genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047106128123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                y+C+ C++sF++   L  H  +H
  evm.model.supercontig_1.3 106 YECKTCNRSFPSFQALGGHRASH 128
                                99**********99999998887 PP
2zf-C2H213.30.00025193215123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++Cg  F++   L  H+r+H
  evm.model.supercontig_1.3 193 HECSICGSEFTSGQALGGHMRRH 215
                                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.22E-8105128No hitNo description
PfamPF139122.0E-13105130IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.926106133IPR007087Zinc finger, C2H2
SMARTSM003550.06106128IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576677.22E-8188215No hitNo description
PROSITE profilePS501579.785193220IPR007087Zinc finger, C2H2
PfamPF139123.3E-11193216IPR007087Zinc finger, C2H2
SMARTSM003550.019193215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEAQGDQVSL PPSHHHQSHR MMIKGKRTKR QRQSSPLIPM ISTSSTASAG VVDHDYVSSP  60
TSSSTEEEED MANCLILLAQ GRHHPRRLQE VTSSKVSSDQ KFNQVYECKT CNRSFPSFQA  120
LGGHRASHKK PKPNFPSKDD VEDQAQVPKI NMIIINSSPP PPQTTISLQP NSNTHKAYHH  180
STSSGNQNKS KIHECSICGS EFTSGQALGG HMRRHRTAAA AAAGGGLQDT SSTNESNNGE  240
ITHEMKPRNI LALDLNLPAP EDHDHRGETK FQYGSTQQGL VFSTPALVDC HY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910383.10.0zinc finger protein ZAT5
TrEMBLU5GN939e-75U5GN93_POPTR; Uncharacterized protein
STRINGevm.model.supercontig_1.30.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58622748
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-50C2H2 family protein