PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.supercontig_1.178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | ERF | ||||||||
Protein Properties | Length: 380aa MW: 41194.9 Da PI: 4.5946 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 9.7e-16 | 131 | 178 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 s+ GVr++k +g+W+AeIr+p++ ++r +lg+++t e+Aa a+ a + + evm.model.supercontig_1.178 131 SKPVGVRQRK-WGKWAAEIRHPVT---KTRMWLGTYDTLEQAANAYNAKKIE 178 7899*****9.**********754...5******************988766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.79E-20 | 131 | 179 | No hit | No description |
Pfam | PF00847 | 6.2E-10 | 131 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-15 | 132 | 179 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.991 | 132 | 196 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-15 | 132 | 196 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-7 | 133 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-20 | 135 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-7 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MPEPRKQSLN QTNKTCKKAT KKTNQTSDVP VSSEKSKMMR KIRVIVDDPY ATDSSSSDDE 60 PDYGKVRKRK RIVREIKLPI PIVASAQSNH SEPESSCQDS NYGSKTLVPK TPISKKRVLT 120 KTMSNRRPAG SKPVGVRQRK WGKWAAEIRH PVTKTRMWLG TYDTLEQAAN AYNAKKIEFD 180 AIAMAAAGTE KSNNLSCSVA ASHSHNTDPA ASSDGSESVL SHTSPSSVLE LDTSASASAS 240 ASASASNIDV DCGEPVKEGF TLDVDDDCDD LIKEEFGFNF ADLQIPDLGG FIDEPLMSGT 300 VEQELNFGGG MDYLFVDEFG KLMDDYCTID DLSIHGIQGD DPSDLPDCDF GDCDLELVVD 360 DDKFGFVDKV AAPLNIACP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.model.supercontig_1.178 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910497.1 | 0.0 | ethylene-responsive transcription factor ERF119 | ||||
Refseq | XP_021910498.1 | 0.0 | ethylene-responsive transcription factor ERF119 | ||||
TrEMBL | A0A0D2PX39 | 1e-100 | A0A0D2PX39_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8KWE6 | 1e-100 | A0A1U8KWE6_GOSHI; ethylene-responsive transcription factor ERF119 | ||||
STRING | evm.model.supercontig_1.178 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2537 | 26 | 71 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25890.2 | 5e-53 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.model.supercontig_1.178 |