PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_1.108
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 314aa    MW: 34917.9 Da    PI: 6.6788
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_1.108genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.28.6e-291332554128
                          NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                                  +++F+P+de+l+v++L+  + g++l+  ++i+evd+y+++  +L  kk+++   +  y+F+  +++   ++   r t+sgyW
  evm.model.supercontig_1.108 133 CYHFQPSDEDLIVKFLAMMIGGNELDD-HIIQEVDLYSYDADELSiKKFRHcPGRMAYYFVDLKEEI--NEYLIRPTRSGYW 211
                                  689*********************999.88**************86555543445679999887765..457888899**** PP

                          NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +t +dk++++ ++ +vg  ktLvfykg+ p g++t Wvmhey+l
  evm.model.supercontig_1.108 212 TTTETDKKIYK-RSLVVGFMKTLVFYKGTPPYGRETPWVMHEYNL 255
                                  ***********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.707130284IPR003441NAC domain
SuperFamilySSF1019411.96E-28132260IPR003441NAC domain
PfamPF023658.8E-15134255IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MASDANANPQ TFSSTGAQDN PDSSLPIATA PSSDPNDNPK ISSGSSVGST EDNPNSSSAK  60
DSVPGFGTEE NPKPSSAHKG KASHACSDEE LMERDKGKKR MASSSSKRSR QGELDAVVPS  120
TTPVGEQILA RNCYHFQPSD EDLIVKFLAM MIGGNELDDH IIQEVDLYSY DADELSIKKF  180
RHCPGRMAYY FVDLKEEINE YLIRPTRSGY WTTTETDKKI YKRSLVVGFM KTLVFYKGTP  240
PYGRETPWVM HEYNLNPKAI PPDVYHGDVR DRTQRIRVCL VKHKMESHYV SPIPRISYRV  300
DEDAFSGRHA GRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-1813425521142NO APICAL MERISTEM PROTEIN
1ut4_B5e-1813425521142NO APICAL MERISTEM PROTEIN
1ut7_A5e-1813425521142NO APICAL MERISTEM PROTEIN
1ut7_B5e-1813425521142NO APICAL MERISTEM PROTEIN
4dul_A5e-1813425521142NAC domain-containing protein 19
4dul_B5e-1813425521142NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_1.108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGevm.model.supercontig_1.1080.0(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.17e-23NAC domain containing protein 57