PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_46440.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 188aa    MW: 21346.7 Da    PI: 6.1529
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_46440.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.75.5e-05128159945
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLe 45 
                             r RR+ri +++  L++l+P       +Kl+ a++L 
  evm.TU.contig_46440.1 128 ARHRRERISEKIRILQRLVPGG-----TKLDTASMLD 159
                            699*****************86.....7888888885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.594119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-7124160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-5124160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-5125160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDINHTNFPN HCWNNHEILS GEDGGVGHLH NQITFNSLCP PNYSHQIFSS SSPSSPPSTQ  60
IIPTYTTNLF AQNMEMDEEE EPEEELGAMK EMMYKIAAMQ PVDIDPTTIR KPKRRNVRIS  120
DDPQSVAARH RRERISEKIR ILQRLVPGGT KLDTASMLDE PFGTLSSWRG KFVFSSQTAS  180
KINGQEWX
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_46440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910733.11e-118LOW QUALITY PROTEIN: transcription factor HEC3-like
TrEMBLA0A2K1ZSJ84e-53A0A2K1ZSJ8_POPTR; Uncharacterized protein
STRINGevm.TU.contig_46440.11e-139(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44492754
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.11e-33bHLH family protein