PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_46342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 127aa MW: 14413.9 Da PI: 9.2328 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 31.5 | 2.2e-10 | 2 | 25 | 19 | 42 |
HHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 19 gilKKAeELSvLCdaevaviifss 42 g++KK + L++LCd++++vii+s+ evm.TU.contig_46342.1 2 GLMKKVSKLCTLCDVKACVIIYSP 25 9**********************8 PP | |||||||
2 | K-box | 17.7 | 1.4e-07 | 45 | 91 | 26 | 73 |
K-box 26 keienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 + ++L+ eq + +G++L++L+l +L+ L +e+ +k+i + K+e l evm.TU.contig_46342.1 45 DFKRMLEMEQSKKMGKSLHQLNLIDLNDLGWLIEQHVKEIQK-KMETL 91 56689***********************************75.55554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00266 | 2.16E-17 | 2 | 58 | No hit | No description |
SuperFamily | SSF55455 | 4.19E-11 | 2 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-8 | 2 | 26 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MGLMKKVSKL CTLCDVKACV IIYSPYDSQP DVWPSPLGAQ HMLADFKRML EMEQSKKMGK 60 SLHQLNLIDL NDLGWLIEQH VKEIQKKMET LNKSPQPQEV RDGGVMKGPS ETFTQIKENS 120 RVKKLQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_46342.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910735.1 | 4e-86 | agamous-like MADS-box protein AGL80, partial | ||||
TrEMBL | A0A2H5NT82 | 2e-32 | A0A2H5NT82_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S796 | 3e-32 | V4S796_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4SWL0 | 2e-32 | V4SWL0_9ROSI; Uncharacterized protein | ||||
STRING | evm.TU.contig_46342.1 | 9e-89 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-23 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_46342.1 |