PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_45808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bHLH | ||||||||
Protein Properties | Length: 261aa MW: 29023.5 Da PI: 6.6966 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.4e-13 | 116 | 162 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq evm.TU.contig_45808.1 116 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 162 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.831 | 112 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.16E-14 | 115 | 166 | No hit | No description |
SuperFamily | SSF47459 | 2.88E-19 | 115 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-10 | 116 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.0E-19 | 116 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-14 | 118 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MIFGRELSLG GSQSQSVSIN FSPKVENDSG FALDSYDVQA VGSSQVYNNS SNGFRGDDSD 60 VKLFPQLNQM ISGGFNAPAL VPNPELPKDE SFSLPDERKP RKRGRKPANG REEPLNHVEA 120 ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITYITD LQMKIRVLET EREMVNNKQQ 180 LTVPEIDFQA QHEDAVVRLS SPLDAHPVSR VIKTFRDHQI AAQESNVSLS ENNVIHTFSI 240 RTQSGAAEQL KDQLVAAFSK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-30 | 110 | 193 | 2 | 83 | Transcription factor MYC2 |
5gnj_B | 2e-30 | 110 | 193 | 2 | 83 | Transcription factor MYC2 |
5gnj_E | 2e-30 | 110 | 193 | 2 | 83 | Transcription factor MYC2 |
5gnj_F | 2e-30 | 110 | 193 | 2 | 83 | Transcription factor MYC2 |
5gnj_G | 2e-30 | 110 | 193 | 2 | 83 | Transcription factor MYC2 |
5gnj_I | 2e-30 | 110 | 193 | 2 | 83 | Transcription factor MYC2 |
5gnj_M | 2e-30 | 110 | 193 | 2 | 83 | Transcription factor MYC2 |
5gnj_N | 2e-30 | 110 | 193 | 2 | 83 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 105 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_45808.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910748.1 | 0.0 | transcription factor bHLH3-like, partial | ||||
Swissprot | A0A3Q7H216 | 1e-105 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A067FM98 | 1e-133 | A0A067FM98_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TUI2 | 1e-133 | V4TUI2_9ROSI; Uncharacterized protein | ||||
STRING | evm.TU.contig_45808.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6611 | 27 | 41 | Representative plant | OGRP9430 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 6e-94 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_45808.1 |
Publications ? help Back to Top | |||
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