PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.TU.contig_45766.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 101aa MW: 11524.6 Da PI: 10.8434 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.4 | 2.6e-13 | 30 | 75 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P++ +k + a++L +Ave+Ik+Lq evm.TU.contig_45766.1 30 SIAERVRRTRISERMKKLQELFPSL----DKQTNTADMLDMAVEHIKDLQ 75 689*********************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.119 | 24 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.02E-16 | 26 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.39E-9 | 28 | 79 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 29 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-11 | 30 | 80 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-10 | 30 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 101 aa Download sequence Send to blast |
MAVIEKFLHF QGSVPCKIRA KRGFATHPRS IAERVRRTRI SERMKKLQEL FPSLDKQTNT 60 ADMLDMAVEH IKDLQKQVKK LTDTKARCTC KEKPLSNLSA * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.TU.contig_45766.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889316.1 | 4e-69 | transcription factor bHLH130-like isoform X1 | ||||
Swissprot | Q66GR3 | 8e-41 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A2N9FJL3 | 2e-53 | A0A2N9FJL3_FAGSY; Uncharacterized protein | ||||
STRING | evm.TU.contig_45766.1 | 3e-68 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6293 | 27 | 45 | Representative plant | OGRP511 | 15 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42280.1 | 3e-43 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.TU.contig_45766.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|