PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.TU.contig_43437.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 128aa MW: 14428.8 Da PI: 10.7991 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.8 | 1.9e-15 | 21 | 64 | 3 | 46 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 en+ qvtfsk r ++KKA+EL++LC +v +i+f ++++ evm.TU.contig_43437.1 21 MENEASLQVTFSKHRSSLFKKASELCTLCRPDVGLIVFFPRNRA 64 5899999*******************************998875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.385 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-18 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-19 | 12 | 84 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-14 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-17 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-14 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.0E-14 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 128 aa Download sequence Send to blast |
MADEGTSSKS KGHQKIELIK MENEASLQVT FSKHRSSLFK KASELCTLCR PDVGLIVFFP 60 RNRAFCYGNP NIDIVIDHFL SIDVRPAKIL TMTMILNKQS VGSMRLKTRR RQQGSKVKSS 120 NKEEKAR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.TU.contig_43437.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC238590 | 1e-140 | AC238590.1 Carica papaya BAC clone 12I03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021909173.1 | 1e-65 | myocyte-specific enhancer factor 2-like | ||||
Swissprot | Q9FKK2 | 1e-26 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | G7I711 | 2e-26 | G7I711_MEDTR; MADS-box transcription factor family protein | ||||
STRING | evm.TU.contig_43437.1 | 8e-90 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-29 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.TU.contig_43437.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|