PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_42663.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB | ||||||||
Protein Properties | Length: 103aa MW: 11961.9 Da PI: 10.4642 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.3e-18 | 9 | 56 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++v+++G g W++++ g++R++k+c++rw++yl evm.TU.contig_42663.2 9 KGAWTAEEDDRLRKCVEKYGEGKWHRVPFAAGLNRCRKSCRLRWLNYL 56 79*********************************************7 PP | |||||||
2 | Myb_DNA-binding | 37.1 | 7.6e-12 | 62 | 102 | 1 | 43 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 r ++T +E +l + +k+lG++ W++Ia +++ gRt++++k++ evm.TU.contig_42663.2 62 REKFTVDEVDLMMRMHKLLGNR-WSLIAGRLP-GRTANDIKNY 102 789*******************.*********.********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.422 | 1 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.73E-29 | 6 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 6 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 8 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 9 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.65E-10 | 11 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 60 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.866 | 61 | 102 | IPR017930 | Myb domain |
SMART | SM00717 | 0.016 | 61 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-10 | 62 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-6 | 64 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MEAPLGLKKG AWTAEEDDRL RKCVEKYGEG KWHRVPFAAG LNRCRKSCRL RWLNYLSPNI 60 NREKFTVDEV DLMMRMHKLL GNRWSLIAGR LPGRTANDIK NY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-21 | 7 | 102 | 2 | 96 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-21 | 7 | 102 | 2 | 96 | C-Myb DNA-Binding Domain |
1msf_C | 1e-21 | 7 | 102 | 2 | 96 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_42663.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910894.1 | 4e-71 | LOW QUALITY PROTEIN: transcription factor MYB114-like | ||||
Swissprot | Q9FNV9 | 3e-53 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | B6V7D2 | 9e-57 | B6V7D2_VITVI; R2R3 MYB transcription factor | ||||
STRING | evm.TU.contig_42663.2 | 2e-70 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-55 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_42663.2 |
Publications ? help Back to Top | |||
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