PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_41623.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 239aa    MW: 26936 Da    PI: 10.4165
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_41623.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.71.1e-211762449
                           -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           +n+sn +vtfskRr+g++KKA+EL++LC++++a+i+fs+  k++ +
  evm.TU.contig_41623.1 17 NNESNLHVTFSKRRAGLFKKASELCTLCGVNIAIIVFSPGRKVFSF 62
                           799************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-29665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.651666IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-26791IPR002100Transcription factor, MADS-box
CDDcd002651.89E-31778No hitNo description
PRINTSPR004042.8E-16828IPR002100Transcription factor, MADS-box
PfamPF003192.1E-231662IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVKKSRGRQK VEMVKMNNES NLHVTFSKRR AGLFKKASEL CTLCGVNIAI IVFSPGRKVF  60
SFGHPSVETM VERFINGNPP QVTSGTMKFI EAHRNASVRE LNMQLTQVLN QLEIEKNRSE  120
ELNQMKRVNE NQCWWMAPKE DMSLAQLQQV KASFDELKKN VAKHVEKIVI HSSNNHPHLP  180
LPCPHHHHPH HPFFLGSSSS GVGLPFETRP IGFNTSVVPF NNPNMMPTGN QGFGQGFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_41623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385903e-95AC238590.1 Carica papaya BAC clone 12I03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021910936.11e-176agamous-like MADS-box protein AGL62
TrEMBLA0A067EEZ41e-94A0A067EEZ4_CITSI; Uncharacterized protein
STRINGevm.TU.contig_41623.11e-176(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-62AGAMOUS-like 62