PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.TU.contig_40341.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

LBD

Protein Properties

Length: 89aa MW: 9858.93 Da PI: 3.9717

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.TU.contig_40341.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.2	2.3e-13	1	41	61	101
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +vyeA ar+rdPvyG++g i +lq+q+++l+a+la++++e+ evm.TU.contig_40341.1 1 MVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEI 41 69**********************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	3.0E-11	1	38	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	9.542	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MVYEASARIR DPVYGCAGAI CQLQKQVNEL QAQLAKAQAE ILNNNDSPQS MDMTFNVSSP 60 SYQSNLNCLF EDNNNANTTQ PLWETLWT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.TU.contig_40341.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021910984.1	1e-51	LOW QUALITY PROTEIN: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	4e-22	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A061GTD1	8e-28	A0A061GTD1_THECC; LOB domain-containing protein 1
STRING	evm.TU.contig_40341.1	3e-59	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105
Representative plant	OGRP16263	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-17	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	evm.TU.contig_40341.1