PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_40216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | MYB_related | ||||||||
Protein Properties | Length: 225aa MW: 24812.2 Da PI: 6.39 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.7e-10 | 50 | 89 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 WT+ E +ll++ + ++G + W+++a+ ++ ++t +c+s++ evm.TU.contig_40216.1 50 VWTEAETLLLLESILKHGDD-WELVAQNIP-TKTKLDCISKL 89 6*****************88.*********.*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-7 | 40 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 16.109 | 46 | 97 | IPR017884 | SANT domain |
SMART | SM00717 | 1.2E-7 | 47 | 95 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.64E-9 | 47 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.3E-10 | 50 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.21E-8 | 51 | 88 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
LWKLKNNLHV QGNFIICIKC FKNGNYGENK SADDFKLSNC IESDRHCGVV WTEAETLLLL 60 ESILKHGDDW ELVAQNIPTK TKLDCISKLI ELPFGELMLS SVHGSDNFAG SSGTVDGTKN 120 VTLPSFEHQE SIKGGDPDHE QINDNELNGG AASEEPLLKR RQVALPSDAG SSLMNQFFPQ 180 VGGSVCSMVI LKKRMCLALN VVRRLDKART SQYRATWLGH LLEN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_40216.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021910992.1 | 1e-117 | SWI/SNF complex subunit SWI3A-like, partial | ||||
TrEMBL | A0A2C9VQA2 | 3e-59 | A0A2C9VQA2_MANES; Uncharacterized protein | ||||
TrEMBL | A0A2C9VQB4 | 2e-58 | A0A2C9VQB4_MANES; Uncharacterized protein | ||||
STRING | evm.TU.contig_40216.1 | 1e-166 | (Carica papaya) |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_40216.1 |