PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.TU.contig_39415.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 19413.3 Da PI: 9.732 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61 | 1.4e-19 | 6 | 47 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+n+s r++tf kR++g++KKA+EL +LC+++ ++ii+ss + evm.TU.contig_39415.1 6 ISNESTRKITFQKRKKGLMKKASELVTLCGINMCMIIYSSYN 47 9**************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-17 | 1 | 55 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.035 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.30E-27 | 2 | 80 | No hit | No description |
SuperFamily | SSF55455 | 1.44E-21 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-18 | 6 | 47 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 170 aa Download sequence Send to blast |
MKLALISNES TRKITFQKRK KGLMKKASEL VTLCGINMCM IIYSSYNTQP EVWPSPFGVQ 60 SVLNIFNAMS KIDQSKKMLN QEVFVKQSMK KTKDQLNKLH KDNRDKEIIQ FMFDSLNGIN 120 LNDGDNLQNS SKNHLWLMDF GLGKMIMPME DNDNKNIENN NNNNDNGAT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the development of gametophytes and seeds. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | evm.TU.contig_39415.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by MEA in seeds, and by PKL after germination. {ECO:0000269|PubMed:12815071, ECO:0000269|PubMed:16359393}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021898171.1 | 1e-70 | agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q7XJK8 | 6e-37 | PHE2_ARATH; MADS-box transcription factor PHERES 2 | ||||
TrEMBL | U5GF69 | 2e-45 | U5GF69_POPTR; Uncharacterized protein | ||||
STRING | evm.TU.contig_39415.1 | 1e-120 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65300.1 | 2e-36 | AGAMOUS-like 38 |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm.TU.contig_39415.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|