PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_38884.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 171aa MW: 18990.1 Da PI: 8.5277 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.5 | 4.5e-10 | 91 | 130 | 10 | 49 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +v fs ++ ++KK +EL++L +a++ +iifs+++k++ + evm.TU.contig_38884.2 91 KVIFSMCQAKLFKKMSELCTLFGADIVIIIFSPSQKVFSF 130 5678888899***************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-4 | 28 | 133 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-12 | 89 | 150 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-13 | 89 | 130 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.722 | 89 | 134 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MALDEDLSLA QLRQLKASLD ELKKNMVKCV EKIMIHTSNN HPHRHNHPHH PFFMGISSSG 60 ANVPFETSPA RFHSTIGPFN NPNMMPPGNL KVIFSMCQAK LFKKMSELCT LFGADIVIII 120 FSPSQKVFSF GHPSVEIVVE HFISSPPQDA SGSMKCFKAH RNTSVCELNM * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_38884.2 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911656.1 | 2e-32 | agamous-like MADS-box protein AGL62, partial | ||||
STRING | evm.TU.contig_38884.2 | 1e-122 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-20 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_38884.2 |