PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_38558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | GRAS | ||||||||
Protein Properties | Length: 259aa MW: 29653.3 Da PI: 8.9617 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 96.8 | 3.3e-30 | 143 | 258 | 4 | 121 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 L +cA+av++ +++ a+++L +++++sp g+ ++Rla+yf++AL arla+ +s+ ++++ +s+++ + ++ + ++k+++ v+P+ evm.TU.contig_38558.1 143 PLNQCAQAVANMNQKTANEMLYLIRQHSSPFGNGTERLAHYFANALDARLAGASSTFSSQILSSRKA--SATDIIRVYKAYVSVCPFR 228 599*************************************************777777766444444..499**************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisq 121 ++s+ aN+ I + +e+ +++HiiDf+is+ evm.TU.contig_38558.1 229 RVSNRFANRNIAKIAENLTKIHIIDFGISY 258 ****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 20.946 | 114 | 259 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-27 | 143 | 258 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
RRAFRRRNGG HLSMLQDPLA LQAAERSFYN ALIGQDHLPN SSRHFKKITQ NPAGFTYESD 60 LEFNSSGGRK HHPYKDELEE RCCRKSAEVT EMLNREFVVD ENGDRVLCCP FDDPIKRKEY 120 EKLIEQDRMQ LYMESGIVDL WSPLNQCAQA VANMNQKTAN EMLYLIRQHS SPFGNGTERL 180 AHYFANALDA RLAGASSTFS SQILSSRKAS ATDIIRVYKA YVSVCPFRRV SNRFANRNIA 240 KIAENLTKIH IIDFGISYX |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_38558.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017982223.1 | 1e-46 | PREDICTED: scarecrow-like protein 30 | ||||
TrEMBL | A0A061GXR2 | 7e-46 | A0A061GXR2_THECC; GRAS family transcription factor, putative | ||||
STRING | evm.TU.contig_38558.1 | 0.0 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 2e-38 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_38558.1 |