PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_38552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 109aa MW: 12436.5 Da PI: 10.7741 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47.4 | 2.5e-15 | 16 | 62 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n++n q+tfskRr+ + KKA+E S+L + ++a+iifs++ k + + evm.TU.contig_38552.1 16 MSNEINFQITFSKRRASLSKKASEWSTLRGLDIAIIIFSPSKKAFSF 62 589*************************************9987665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.2E-19 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-19 | 6 | 78 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 18.614 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-13 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-16 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-13 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-13 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MDRKSKGRQK IEMIKMSNEI NFQITFSKRR ASLSKKASEW STLRGLDIAI IIFSPSKKAF 60 SFGHPCVEKV IEDFICGNPP RDTSRAMTLI EVHRNSRIHE LNMILTQV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_38552.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238590 | 1e-162 | AC238590.1 Carica papaya BAC clone 12I03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911064.1 | 4e-75 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 8e-35 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V4SG26 | 2e-40 | V4SG26_9ROSI; Uncharacterized protein | ||||
STRING | evm.TU.contig_38552.1 | 1e-74 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-29 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_38552.1 |
Publications ? help Back to Top | |||
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