PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_37906.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 353aa MW: 38954.9 Da PI: 4.7001 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.4 | 5.9e-16 | 20 | 64 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + en+ qvtfsk r ++KKA+EL++LC +v +i+fs+ ++ evm.TU.contig_37906.1 20 KMENEASLQVTFSKHRSSLFKKASELCTLCRPDVGLIVFSPGNRA 64 6799999*********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-21 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.081 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-22 | 12 | 93 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-15 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-18 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-15 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-15 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MADEGTSSKN KGRQKIESKK MENEASLQVT FSKHRSSLFK KASELCTLCR PDVGLIVFSP 60 GNRAFCYGNP NIDIVIDRFL SIDVRPARDP HNDNDTQQTI SRITETRRRQ QGSEVKSSNK 120 EKSLMKELWY TRLMDKFNLE ELEVLDVGMK ALWNDVAELA KKLKKEQGNS RSTEGSPRDD 180 RMFYSDPAMK ALTTLPMPSM PSNPTHEYAP SSTNSTPPLS SFCNLDSGNP NIMMMDNPLK 240 DSSMALDPAD DLKAMPRDLF NNLVMIESDD PIAALNAGDN PDIMSDAFGN QIATMDINLS 300 NDPNIGPNEI FNPSTMPHAP NDPISTTSNA LNMIRIVPDD SNLDSVVCGS IG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_37906.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ410395 | 0.0 | KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911410.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
STRING | evm.TU.contig_37906.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-31 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_37906.1 |