PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_37718.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 249aa MW: 27331.1 Da PI: 4.4134 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.1 | 3.5e-16 | 20 | 64 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + en+ qvtfsk r ++KKA+EL++LC +v +i+fs+ ++ evm.TU.contig_37718.1 20 KMENEASLQVTFSKHRSSLFKKASELCTLCRPDVGLIVFSPGNRA 64 6799999*********************************98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.759 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-21 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.15E-21 | 12 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-15 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-19 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-15 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-15 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MADEGTSSKS KGHQKIELKK MENEASLQVT FSKHRSSLFK KASELCTLCR PDVGLIVFSP 60 GNRAFCYGNP NIDIVIDRFL SIDVRPAKIL TTTMILNKQS VGSMSLEELE VLDAGTKALW 120 NDVAELAKKL KKEQDSGNPT IMMMNNPLND SSMALDPVDD LKAMPRDLFN NLVMIDTTSD 180 ALNMIRIVRD DSNLDSVFDG FTLEMLFTDP LDDENFIVDN PNEAANSDYS KTMPPPLAGN 240 VLGSGQGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_37718.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238590 | 1e-149 | AC238590.1 Carica papaya BAC clone 12I03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021909173.1 | 1e-113 | myocyte-specific enhancer factor 2-like | ||||
STRING | evm.TU.contig_37718.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-31 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_37718.1 |