PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_37644.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 306aa    MW: 33827.7 Da    PI: 5.2541
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_37644.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.3e-162064246
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                           + en+   qvtfsk r  ++KKA+EL++LC  +v +i+fs+ ++ 
  evm.TU.contig_37644.1 20 KMENEAILQVTFSKHRSSLFKKASELCTLCRPDVGLIVFSPGNRA 64
                           67899999********************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.311171IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-201170IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-211283IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-141333IPR002100Transcription factor, MADS-box
PfamPF003191.6E-172067IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-143348IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-144869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MADEGTSSKS KGHQKIELKK MENEAILQVT FSKHRSSLFK KASELCTLCR PDVGLIVFSP  60
GNRAFCYGNP NIDIVIDRFF SIDVRPVKIL TTTMILNKQL AQDKEEAARK RGKELKQRRK  120
GLMKELWYMH SMDKFSLEEL EVLDAGMKAL WNDVAELAKK LKKEQGNSSS AEGSPRDDGM  180
FYSDPAMKAL ITLPMPSMPS NPTHEYAPSS TNSTPPLSSF CNLDSGNPTI MMMDNPLNDS  240
SMALDPVDDL KAMPRDLFNN LMLFADPLDD ENFIVDNPNE AANGDNPKTM PPPLAGNVLG  300
SSQGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_37644.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4103950.0KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911410.11e-164agamous-like MADS-box protein AGL62
STRINGevm.TU.contig_37644.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-32AGAMOUS-like 62