PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_37271.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26544.4 Da    PI: 10.4606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_37271.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.73.2e-231762449
                           -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                           +n+sn qvtfskRr+g++KKA+ELS+LC+ae+a+i+fs+ +k++ +
  evm.TU.contig_37271.1 17 NNESNLQVTFSKRRAGLFKKASELSTLCGAEIAIIVFSPGQKVFSF 62
                           799***************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-32665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.053666IPR002100Transcription factor, MADS-box
CDDcd002651.29E-33774No hitNo description
SuperFamilySSF554558.89E-26786IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-19828IPR002100Transcription factor, MADS-box
PfamPF003198.4E-251662IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-192843IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-194364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MARKSKGRQK VEMVKMNNES NLQVTFSKRR AGLFKKASEL STLCGAEIAI IVFSPGQKVF  60
SFGHPCVHTV LERFVCGNPP QAASGTMKLI EAHRNTSVRE LNTQLTQVLN QLEIEKKRGE  120
ELNHMKKANE NQCWWMARKN DMSLTQLQQL KASLDELKKN VAKQAEKIVI HTQNNHHPHP  180
HPHHHHPNHP FFLGSSSGGV GLPFETKPAG FSSSIVPFNN PNMIPPQYHG FGQGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-17792186Myocyte-specific enhancer factor 2A
3kov_B2e-17792186Myocyte-specific enhancer factor 2A
3kov_I2e-17792186Myocyte-specific enhancer factor 2A
3kov_J2e-17792186Myocyte-specific enhancer factor 2A
3p57_A2e-17792186Myocyte-specific enhancer factor 2A
3p57_B2e-17792186Myocyte-specific enhancer factor 2A
3p57_C2e-17792186Myocyte-specific enhancer factor 2A
3p57_D2e-17792186Myocyte-specific enhancer factor 2A
3p57_I2e-17792186Myocyte-specific enhancer factor 2A
3p57_J2e-17792186Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_37271.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385901e-179AC238590.1 Carica papaya BAC clone 12I03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911125.11e-176agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-58AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A067EEZ45e-95A0A067EEZ4_CITSI; Uncharacterized protein
STRINGevm.TU.contig_37271.11e-176(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-52AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]