PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_37047.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 298aa    MW: 33497.8 Da    PI: 9.6829
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_37047.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.85.8e-182064549
                           SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                 SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +n qvtf+kR + i+KKA+E+S+LC+a+ aviifs+  k++ +
  evm.TU.contig_37047.1 20 KATNLQVTFAKRPASIFKKASEISTLCGAKFAVIIFSPAKKVFFF 64
                           57899**********************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-20867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.353868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-21982IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-131030IPR002100Transcription factor, MADS-box
PfamPF003191.2E-161863IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-133045IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-134566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEPPWKVKGR QMIEMVKMKK ATNLQVTFAK RPASIFKKAS EISTLCGAKF AVIIFSPAKK  60
VFFFVSPSME KLINRFSGLI EQPPSANRCM MDAHRNAYLQ GLNSQLNKLN AQLDAKKKQS  120
VELKKVMKEN ASKAWWMGSI DDMNLSQLQQ FQAPLEELYE NVIKVAKEKD VEEDNINPNS  180
DDQLFLGTSS NRTRLPFESI PLNAIVGPRN MVNPNMNRML RDMLNNNNPN IPLSNSMIPN  240
NPNMVSNVMP INSNPTNMML SAANIMINND QNMVPVDHMM MNNDQNMMVG GSDAIND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_37047.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2386371e-150AC238637.1 Carica papaya BAC clone 99B01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911134.10.0agamous-like MADS-box protein AGL23
STRINGevm.TU.contig_37047.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-41AGAMOUS-like 62