PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_36643.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 401aa    MW: 44069.5 Da    PI: 4.2881
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_36643.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF421.2e-132064246
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                           + en+   qvt+sk r  ++KK +EL++LC  +v +i+fs+ ++ 
  evm.TU.contig_36643.1 20 KMENEASLQVTLSKHRSSLFKKVSELCTLCRPDVGLIVFSPGNRA 64
                           6799999*********************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-191170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.5391171IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.22E-191284IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-131333IPR002100Transcription factor, MADS-box
PfamPF003192.5E-162067IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-133348IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-134869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEDEGTSSKS KGRQKIESKK MENEASLQVT LSKHRSSLFK KVSELCTLCR PDVGLIVFSP  60
GNRAFCYGNP NIDIVIDRFL SIDVRPARDP DNENDTQQII SRITKAQDKE EAARKRDKEL  120
KQRRKGLMKE LWYTRSMDKL NLEELEVLDA GMKALWNDVA ELAKKLKKDL GNSSSAEGSP  180
RDDGMFYSDP AMKALTTLPM PSMPSNPTHE YAPSSTNSTP PLSSFCNLDS GNPNIMMMDN  240
PLNDSSMALD PVDDLKAMPR DLFNNLVMIE SDDPIAALNA GDNPDIMSDA FGNQIATMDI  300
NLSNDPNIGP NEFFNPSNMP HAPNDPISTT SDALNMIRIV PDDSNLDSVF DGFTLEMLFA  360
DPLDDENFIV DNPNEAVNGD NPKTMPPPLA GNVLGSGQGF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_36643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4103950.0KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911410.10.0agamous-like MADS-box protein AGL62
STRINGevm.TU.contig_36643.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-32AGAMOUS-like 62