PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_35176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 108aa MW: 11928.2 Da PI: 10.7275 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.7 | 5.6e-22 | 7 | 53 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 i+ +n qvtf+kR +gi+KKA+E+S+LC+aevaviifs+ k++ + evm.TU.contig_35176.1 7 IKKATNLQVTFAKRWAGIFKKASEISTLCGAEVAVIIFSPAKKVFFF 53 8999*************************************999866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.731 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-20 | 2 | 56 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-23 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-21 | 6 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-9 | 19 | 34 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-9 | 34 | 55 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MVEMVKIKKA TNLQVTFAKR WAGIFKKASE ISTLCGAEVA VIIFSPAKKV FFFVNPSVEK 60 LINRFSGLIE QPLSANRCMM DAHRNACLQG LNSQLNKLNA QLDAKKK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_35176.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238637 | 1e-133 | AC238637.1 Carica papaya BAC clone 99B01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911849.1 | 5e-65 | agamous-like MADS-box protein AGL23 | ||||
Swissprot | Q9FKK2 | 1e-28 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067L145 | 7e-32 | A0A067L145_JATCU; Uncharacterized protein | ||||
STRING | evm.TU.contig_28241.3 | 9e-73 | (Carica papaya) | ||||
STRING | evm.TU.contig_35176.1 | 9e-73 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 5e-31 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_35176.1 |
Publications ? help Back to Top | |||
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