PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_35157.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 95aa MW: 10473.1 Da PI: 8.5195 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.4 | 1.2e-20 | 5 | 50 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +n+sn qvtfsk r g++KK +ELS+LC+ae+a+i+fs+++k++ + evm.TU.contig_35157.1 5 NNESNLQVTFSKSRVGLFKKVSELSTLCGAEIAIIVFSPDQKVFSF 50 79*****************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.105 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-19 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.11E-21 | 3 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-22 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-9 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-9 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
MVKMNNESNL QVTFSKSRVG LFKKVSELST LCGAEIAIIV FSPDQKVFSF GHPCVQTVLE 60 CFVSGNPPQA ASGTMKLIEA HRNTNVRELN MQLTQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_35157.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238637 | 1e-158 | AC238637.1 Carica papaya BAC clone 99B01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911220.1 | 2e-59 | agamous-like MADS-box protein AGL62, partial | ||||
Swissprot | Q9FKK2 | 8e-35 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067EEZ4 | 3e-44 | A0A067EEZ4_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SG26 | 3e-44 | V4SG26_9ROSI; Uncharacterized protein | ||||
STRING | evm.TU.contig_35157.1 | 2e-64 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-37 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_35157.1 |
Publications ? help Back to Top | |||
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