PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_34762.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | G2-like | ||||||||
Protein Properties | Length: 260aa MW: 29516.2 Da PI: 8.4736 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.4 | 2.1e-30 | 11 | 65 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wt++LH+rF eav+q+GG+++AtPk il++m+++gLt++hvkSHLQkYR+ evm.TU.contig_34762.1 11 KERLHWTQDLHDRFEEAVNQIGGPDRATPKGILNAMGIEGLTIYHVKSHLQKYRI 65 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.258 | 8 | 68 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-28 | 10 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.73E-17 | 10 | 65 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-24 | 11 | 66 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.0E-8 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.1E-12 | 97 | 139 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGSSRSRGTS KERLHWTQDL HDRFEEAVNQ IGGPDRATPK GILNAMGIEG LTIYHVKSHL 60 QKYRISKFVL ESSSKGKFER SNISEILPNF GSTCAAQLKE ALKMHKEAQR RLSDQNEIHR 120 NLKLKIEAQG RFLGRIAAEY QNRTTSRRTR KSLSLQSTPS LCEESESNAK ETERDLEAER 180 IEMESADHRE IILARKRPRV VEDNNNVFTP PPTSEVTNSD PYNQNLFLAE EEISKQSASD 240 VIFPWNIITC PSPLIASYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-20 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-20 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-20 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-20 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-20 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-20 | 11 | 68 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-20 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-20 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-20 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-20 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-20 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-20 | 11 | 68 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_34762.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021911314.1 | 0.0 | myb family transcription factor PHL7-like | ||||
Swissprot | Q9SJW0 | 8e-46 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A2R6RXD5 | 6e-94 | A0A2R6RXD5_ACTCH; Myb family transcription factor | ||||
STRING | evm.TU.contig_34762.1 | 0.0 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16802 | 10 | 11 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-48 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_34762.1 |