PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_34101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | bHLH | ||||||||
Protein Properties | Length: 91aa MW: 10590.5 Da PI: 10.6657 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.7 | 1.3e-05 | 35 | 81 | 5 | 51 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51 + e+E R r + ++++ + l k+ +++++ l+K++ Le+ v Y+ evm.TU.contig_34101.1 35 AFEVEMERLYRAKVRLDNMKHTLLKLKNQKARNLNKSQLLEESVIYV 81 67899999999999***********85666666**********9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
INLEFNDDMS LKKLLKAKRK ENKKVGIAAG HRWQAFEVEM ERLYRAKVRL DNMKHTLLKL 60 KNQKARNLNK SQLLEESVIY VPVAELKEKA * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_34101.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021893119.1 | 3e-53 | pathogenesis-related homeodomain protein-like | ||||
TrEMBL | A0A2I4FY99 | 3e-21 | A0A2I4FY99_JUGRE; pathogenesis-related homeodomain protein-like isoform X1 | ||||
TrEMBL | A0A2I4FYA2 | 3e-21 | A0A2I4FYA2_JUGRE; pathogenesis-related homeodomain protein-like isoform X2 | ||||
STRING | evm.model.supercontig_95.11 | 6e-52 | (Carica papaya) | ||||
STRING | evm.TU.contig_34101.1 | 1e-57 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8699 | 27 | 38 |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_34101.1 |