PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_34044.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family M-type_MADS
Protein Properties Length: 343aa    MW: 37889.7 Da    PI: 4.4819
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_34044.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.84.3e-162064246
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                           + en+   qvtfsk r  ++KKA+ELS+LC  +v +i+fs+ ++ 
  evm.TU.contig_34044.1 20 KMENEASLQVTFSKHRSSLFKKASELSTLCRPDVGLIVFSPGNRA 64
                           6799999*********************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.3E-221170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.3341171IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-211284IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-151333IPR002100Transcription factor, MADS-box
PfamPF003199.0E-192067IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-153348IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-154869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MADEGTSSKS KGHQKIELKK MENEASLQVT FSKHRSSLFK KASELSTLCR PDVGLIVFSP  60
GNRAFCYGNP NIDIVIDRFL SIDVRPARDP DNDNDTQQTI SRINEAQDKE EAARKRGKEL  120
KQRRKGLMKE LWYTHSMDKF SLEELEVLDA GMKALWNDVA ELAKKLKKEQ GNLSSAEGSQ  180
KDDGMFYSDP AMKALITLPM PSMPSNPTHE YAPSSINSTP PLSSFCNLDS GNPNIMMMDN  240
PLNDSSMALD PVDDLKAMPR DLFNNLVMID TTSDALNMIR IVPDDSNLDS VFDGFTLEML  300
FADPLDDENF IVDNPNEAAN GDNPKTMQPP LAGNVLGSGQ GF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_34044.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4103950.0KJ410395.1 Carica papaya sex-specific marker RX15_10 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911410.10.0agamous-like MADS-box protein AGL62
STRINGevm.TU.contig_34044.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-30AGAMOUS-like 62