PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.TU.contig_33457.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 62aa MW: 7188.61 Da PI: 10.6397 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.3 | 8.2e-08 | 13 | 48 | 8 | 43 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 r++ f kR++g++ K +EL L d++ ii+s+ evm.TU.contig_33457.1 13 TRKILFKKRKKGLMMKVSELNSLYDVKSYAIIYSPY 48 68899****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.96E-12 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-5 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.769 | 1 | 46 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-10 | 13 | 48 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
MSRKKVKFAY ITTRKILFKK RKKGLMMKVS ELNSLYDVKS YAIIYSPYDL QQEVWPSPLG 60 A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 22 | RKKVKFAYITTRKILFKKRKK |
2 | 18 | 22 | KKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | evm.TU.contig_33457.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021912469.1 | 2e-22 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | U5GF69 | 4e-17 | U5GF69_POPTR; Uncharacterized protein | ||||
STRING | evm.TU.contig_33457.1 | 6e-37 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.2 | 1e-15 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | evm.TU.contig_33457.1 |