PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.TU.contig_33298.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 328aa    MW: 37419.4 Da    PI: 9.1114
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.TU.contig_33298.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49101371128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrF P+deel+v+yLk+k+ +++l++ ++i+++++yk++Pw+Lp+k+  +e+ew+fFs+rd+ky++g r+nra++sgyWkatg+
  evm.TU.contig_33298.1  10 LPPGFRFYPSDEELIVHYLKNKTYSTPLPA-SIIADIHLYKYNPWELPNKALFGEDEWFFFSPRDRKYPNGVRPNRAAASGYWKATGT 96 
                            79****************************.89***************88888999******************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk++l++ +++ vg+kk Lvfykgr pkg ktdW+m+eyrl
  evm.TU.contig_33298.1  97 DKPILTScGTKSVGVKKALVFYKGRPPKGIKTDWIMQEYRL 137
                            *****9978889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-615162IPR003441NAC domain
PROSITE profilePS5100558.16210162IPR003441NAC domain
PfamPF023655.1E-2511137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MFAFSDRLQL PPGFRFYPSD EELIVHYLKN KTYSTPLPAS IIADIHLYKY NPWELPNKAL  60
FGEDEWFFFS PRDRKYPNGV RPNRAAASGY WKATGTDKPI LTSCGTKSVG VKKALVFYKG  120
RPPKGIKTDW IMQEYRLLDT IVWKQKGSMR LDDWVLCRVR QKNSIPKNTW EDRNSPSSQT  180
VVTGDSTNNV NEKWPLDKNS KTQLANNSLL PDCPLLPYIF ASEDLPCMET IATSISFQNS  240
GCGNHNNFGT NNPRLSVSCF HSLFNPLKRK NTEEQNLAPA PCRKLRKEEM KDIPIGHDGF  300
QDISISRALN QFEVYLYRSG DSQHPDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-67716414167NO APICAL MERISTEM PROTEIN
1ut4_B5e-67716414167NO APICAL MERISTEM PROTEIN
1ut7_A5e-67716414167NO APICAL MERISTEM PROTEIN
1ut7_B5e-67716414167NO APICAL MERISTEM PROTEIN
3swm_A5e-67716417170NAC domain-containing protein 19
3swm_B5e-67716417170NAC domain-containing protein 19
3swm_C5e-67716417170NAC domain-containing protein 19
3swm_D5e-67716417170NAC domain-containing protein 19
3swp_A5e-67716417170NAC domain-containing protein 19
3swp_B5e-67716417170NAC domain-containing protein 19
3swp_C5e-67716417170NAC domain-containing protein 19
3swp_D5e-67716417170NAC domain-containing protein 19
4dul_A5e-67716414167NAC domain-containing protein 19
4dul_B5e-67716414167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.TU.contig_33298.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021911441.10.0NAC transcription factor 25-like
SwissprotQ8GY426e-80NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A2P5YUN41e-133A0A2P5YUN4_GOSBA; Uncharacterized protein
STRINGevm.TU.contig_33298.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17560810
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.13e-82NAC domain containing protein 25